Harbour front
Walking distance to the boats. Noisier and busier, and worth it when your pickup is before dawn and you are not chasing a car through town.

Plan · Where to stay
It is open water with no island. You sleep in Labuan Bajo, about an hour and a half away by speedboat, or aboard the boat itself on a liveaboard.
Ask about liveaboardsTwo options only: a hotel in Labuan Bajo, the gateway town on Flores, or a cabin on the trip boat. There is no accommodation at the site and no island close enough to change that.
Areas
The variable that counts is how far you are from the harbour at half past five in the morning.
Walking distance to the boats. Noisier and busier, and worth it when your pickup is before dawn and you are not chasing a car through town.
Better views and quieter nights, ten to twenty minutes down to the harbour. Fine for a mid-morning departure, tight for a sunrise one.
On a liveaboard you wake up already in the park. No transfer, no 05:00 alarm, and you are at the site before the day boats have left the harbour.
Morning start
Manta timing
Comfort
Cost shape
Suits
For a single day trip, a hotel is almost always the right call. Past two nights the maths and the sleep both favour the boat.
The night before
Not the pool. These are the things that decide how the morning goes.
If your flight lands late the day before, staying near the harbour rather than up the hill removes one variable from a morning that has too many already.
Tell Komodo Luxury how many nights you have and what time your flights are. That decides town-or-boat faster than any hotel list.